{"id":45,"date":"2023-08-09T10:24:09","date_gmt":"2023-08-09T14:24:09","guid":{"rendered":"https:\/\/sites.usnh.edu\/vargalab\/?page_id=45"},"modified":"2024-02-15T22:17:48","modified_gmt":"2024-02-16T03:17:48","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.usnh.edu\/vargalab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n\n\t

2023<\/strong><\/p>\n\t(32) <\/strong>Kwon YH, Joh YA, Leonard BM, Balaz M, and Varga\u00a0K;<\/u> Threonine functionalized colloidal cadmium sulfide (CdS) quantum dots: The role of solvent and counterion in ligand induced chiroptical properties. <\/i>Journal of Colloid and Interface Science<\/i><\/b>\u00a0<\/i>(2023)<\/strong> 642: 771-778.
\nhttps:\/\/doi.org\/10.1016\/j.jcis.2023.03.177<\/a>\n\t\t\t\t\"1-s2.0-S0021979723005453-ga1\"\n\t

2022<\/strong><\/p>\n\t(31)\u00a0<\/strong>Sreter JA, Foxall\u00a0TL, and\u00a0Varga K<\/u>; Intracellular and extracellular antifreeze protein significantly improves mammalian cell cryopreservation.\u00a0Biomolecules<\/i>\u00a0(2022)<\/b>\u00a012: 669.
\nhttps:\/\/doi.org\/10.3390\/biom12050669<\/a>\n\t\t\t\t\"varga_biomolecules2022_gif\"\n\t(30)<\/strong>\u00a0Andrzejczyk J, Jovic K, Brown LM, Pascetta VG,\u00a0Varga K<\/u>, and Vashisth H; Molecular interactions and inhibition of the SARS\u2010CoV\u20102 main protease by a thiadiazolidinone derivative.\u00a0Proteins\u00a0<\/strong><\/em>(2022)<\/strong>\u00a090:\u00a01896-1907.
\nhttps:\/\/doi.org\/10.1002\/prot.26385<\/a>\n\t\t\t\t\"varga_protein2022_gif\"\n\t(29)\u00a0<\/strong>Jevti\u0107\u00a0P, Elliott\u00a0KW, Watkins\u00a0SE, Sreter\u00a0JA, Jovic\u00a0K, Lehner\u00a0IB, Baures\u00a0PW, Tsavalas\u00a0JG, Levy\u00a0DL, and\u00a0Varga, K<\/u>;\u00a0 An insect antifreeze protein from Anatolica polita enhances the cryoprotection of Xenopus laevis eggs and embryos.\u00a0J Exp Biol<\/i>\u00a0(2022)<\/b>\u00a0225 (4): jeb243662.
\nhttps:\/\/doi.org\/10.1242\/jeb.243662\u00a0<\/a>\n\t\t\t\t\"varga_jexpbiology2022_gif\"\n\t(28)\u00a0<\/strong>Kwon\u00a0YH, Tannir\u00a0S, Balaz\u00a0M, and\u00a0Varga\u00a0K;<\/u>\u00a0Apple juice and red wine induced mirror-image circular dichroism in quantum dots.\u00a0<\/i>Chirality<\/i><\/b>\u00a0<\/i>(2022)<\/strong>\u00a034: 70-76.
\nhttps:\/\/doi.org\/10.1002\/chir.23380<\/a>\n\t\t\t\t\"varga_chirality_gif\"\n\t

2021<\/strong><\/p>\n\t(27)\u00a0<\/strong>Joh\u00a0YA, Kwon\u00a0YH, Tannir\u00a0S, Leonard\u00a0BM, Kubelka\u00a0J,\u00a0\u00a0Varga\u00a0K<\/u>, and Balaz\u00a0M;<\/u>\u00a0\u00a0The effect of molecular isomerism on the induced circular dichroism of cadmium sulfide quantum dots.\u00a0<\/i>J Mater Chem C<\/i><\/b>\u00a0<\/i>(2021)<\/strong>, 9:\u00a017483-17495.
\nhttps:\/\/doi.org\/10.1039\/D1TC04496F<\/a>\n\t\t\t\t\"balazvarga_toc-600dpi_gif\"\n\t(26)\u00a0<\/strong>Altincekic\u00a0N,\u00a0et al.<\/i>;\u00a0\u00a0Large-scale recombinant production of the SARS-CoV-2 proteome for high-throughput and structural biology applications.\u00a0<\/i>Front Mol Biosci\u00a0<\/i><\/b>(2021)<\/strong>\u00a08:\u00a0653148.
\nhttps:\/\/www.frontiersin.org\/articles\/10.3389\/fmolb.2021.653148\/abstract<\/a>\n\t\t\t\t\"varga_frontmolbios2020_toc\"\n\t(25)\u00a0<\/strong>Nordyke CT, Ahmed Y, Puterbaugh RZ, Bowman GR, and\u00a0Varga K<\/u>;\u00a0 Intrinsically disordered bacterial polar organizing protein Z, PopZ, interacts with protein binding partners through an N-terminal Molecular Recognition Feature.\u00a0J Mol Bio<\/i><\/b>\u00a0(2020)<\/strong>\u00a0432: 6092-6107.
\nhttps:\/\/doi.org\/10.1016\/j.jmb.2020.09.020<\/a>\n\t\t\t\t\"varga_jmolbio2020_toc\"\n\t(24)\u00a0<\/strong>Tannir S, Levintov L, Townley MA, Leonard BM, Kubelka J, Vashisth H,\u00a0Varga K,<\/u>\u00a0and Balaz M;\u00a0 Functional nanoassemblies with mirror-image chiroptical properties templated by a single homochiral DNA strand.\u00a0Chem Mater<\/i><\/b>\u00a0(2020)<\/strong>\u00a032: 2272-2281.
\nhttps:\/\/doi.org\/10.1021\/acs.chemmater.9b04092<\/a>\n\t\t\t\t\"varga_chemmater2020_gif\"\n\t(23)\u00a0<\/strong>Gupta R, Liu Y, Wang H, Nordyke CT, Puterbaugh RZ, Cui W,\u00a0Varga K<\/u>, Chu F, Ke H, Vashisth H, and Cote RH;\u00a0 Structural analysis of the regulatory GAF domains of cGMP phosphodiesterase elucidates the allosteric communication pathway.\u00a0J Mol Bio<\/i><\/b>\u00a0(2020)<\/strong>\u00a0432: 5765-5783.
\nhttps:\/\/doi.org\/10.1016\/j.jmb.2020.08.026<\/a>\n\t\t\t\t\"varga_jmolbio2020-2_toc\"\n\t

2019<\/strong><\/p>\n\t(22)\u00a0<\/strong>Kratochvilova I, Kopecna O, Bacikova A, Pagacova E, Falkova I, Follett SE, Elliott KW,\u00a0Varga K,<\/u>\u00a0Golan M, and Falk M;\u00a0\u00a0Changes in cryopreserved cell nuclei serve as indicators of processes during freezing and thawing.\u00a0Langmuir\u00a0<\/i><\/b>(2019)\u00a0<\/i><\/strong>35:7496-7508.
\nhttps:\/\/pubs.acs.org\/doi\/abs\/10.1021\/acs.langmuir.8b02742<\/a>\n\t\t\t\t\"varga_langmuir2019_gif\"\n\t(21)\u00a0<\/strong>Balaz M, Joh Y,\u00a0Varga K,<\/u>\u00a0Berova N, Purrello T, and D’Urso A;\u00a0 Structure and electronic circular dichroism of chiral porphyrins and chiral porphyrin dimers.\u00a0Handbook of Porphyrin Science\u00a0<\/strong><\/em>(2019)<\/strong>\u00a0Vol 45, pp 205-284.
\nhttps:\/\/doi.org\/10.1142\/9789811201813_0003<\/a>\n\t

2018<\/strong><\/p>\n\t(20)\u00a0<\/strong>Falk M, Falkova I, Pagacova E, Kopecna O, Bacikova A, Simek D, Golan M, Follett SE, Klejdus B, Elliott KW,\u00a0Varga K,<\/u>\u00a0Tepla O, and Kratochvilova I;\u00a0 Chromatin architecture changes and DNA replication fork collapse are critical features in cryopreserved cells that are differentially controlled by cryoprotectants.\u00a0Sci Rep<\/strong><\/em>\u00a0(2018)\u00a0<\/strong>8: 14694.
\nhttps:\/\/doi.org\/10.1038\/s41598-018-32939-5<\/a>\n\t\t\t\t\"varga_scirep2019_gif\"\n\t

2017<\/strong><\/p>\n\t(19)\u00a0<\/strong>Varga K<\/u>, Tannir S, Haynie BE, Leonard BE, Dzyuba SV, Kubelka K, and Balaz M;\u00a0 CdSe quantum dots functionalized with chiral, thiol-free carboxylic acid: unraveling structural requirements for ligand induced chirality.\u00a0ACS Nano<\/em><\/strong>\u00a0(2017)<\/strong>\u00a011: 9846-9853.
\nhttp:\/\/pubs.acs.org\/doi\/10.1021\/acsnano.7b03555<\/a>\n\t\t\t\t\"varga_acsnano2017_gif\"\n\t(18)\u00a0<\/strong>Balaz M, Tannir S, and\u00a0Varga K<\/u>;\u00a0 Chiral multichromophoric supramolecular nanostructures assembled by single stranded DNA and RNA templates.\u00a0Coord Chem Rev\u00a0<\/em>(2017)<\/strong>\u00a0349: 66-83.
\nhttps:\/\/doi.org\/10.1016\/j.ccr.2017.08.018<\/a>\n\t\t\t\t\"varga_coordchemrev2017_gif\"\n\t(17)\u00a0<\/strong>Hagemann N, Joseph S, Schmidt HP, Kammann CI, Harter J,\u00a0Borch T, Young RB,\u00a0Varga K<\/u>, Taherymoosavi S, Elliott KW, McKenna A, Albu M, Mayrhofer C, Obst M, Conte P, Dieguez-Alonso A, Orsetti S, Subdiaga E, Behrens S, and Kappler A,\u00a0 Organic coating on biochar explains its nutrient retention and stimulation of soil fertility.\u00a0Nature Commun<\/em><\/strong>\u00a0(2017)<\/strong>\u00a08: 1089.
\nhttps:\/\/www.nature.com\/articles\/s41467-017-01123-0<\/a>\n\t\t\t\t\"varga_naturecommun2017_toc\"\n\t(16)\u00a0<\/strong>Kratochvilova I, Golan M, Pomeisl K, Richter J, Sedlakova S, Sebera S, Micova J, Falk M, Falkova I, Reha D, Elliott\u00a0 KW,\u00a0Varga K<\/u>, Follett SE, and Simek D;\u00a0 Theoretical and experimental study of antifreeze protein AFP752, trehalose and dimethyl sulfoxide cryoprotection mechanism: correlation with cryopreserved cell viability.\u00a0RSC Adv\u00a0<\/em>(2017)<\/strong>\u00a07: 352-360.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28936355<\/a>\n\t\t\t\t\"varga_rscadv2017_gif\"\n\t

2016<\/strong><\/p>\n\t(15)\u00a0<\/strong>Holmes JA, Follett SE, Wang H, Meadows CP,\u00a0Varga K,<\/u>\u00a0and Bowman GR;\u00a0 Caulobacter PopZ forms an intrinsically disordered hub in organizing bacterial cell poles.\u00a0PNAS\u00a0<\/em>(2016)<\/strong>\u00a0133: 12490-12495.
\nhttp:\/\/www.pnas.org\/content\/113\/44\/12490.abstract<\/a>\n\t\t\t\t\"varga_pnas2016_gif\"\n\t(14)\u00a0<\/strong>Warner L, Gjersing E, Follett SE, Elliott KW, Dzyuba S, and\u00a0Varga K<\/u>;\u00a0 The effects of high concentrations of ionic liquid on GB1 protein structure and dynamics probed by high-resolution magic-angle-spinning NMR spectroscopy.\u00a0Biochem Biophys Rep\u00a0<\/em>(2016)\u00a0<\/strong>8: 75-80.
\nhttp:\/\/www.sciencedirect.com\/science\/article\/pii\/S2405580816301406<\/a>\n\t\t\t\t\"varga_bbr2016_gif\"\n\t(13)\u00a0<\/strong>Choi JK, Haynie BE, Tohgha U, Pap L, Elliott KW, Leonard BM, Dzyuba SV,\u00a0Varga K<\/u>, Kubelka K, and Balaz M;\u00a0 Chirality Inversion of CdSe and CdS quantum dots without changing the stereochemistry of the capping ligand.\u00a0ACS Nano<\/em>\u00a0(2016)\u00a0<\/strong>10: 3809-3815.
\nhttp:\/\/dx.doi.org\/10.1021\/acsnano.6b00567<\/a>\n\t\t\t\t\"varga_acsnano2016_gif\"\n\t(12)\u00a0<\/strong>Balaz M, Mames I, Pursey JP, Sargisson LL, Stulz E, and\u00a0Varga K<\/u>;\u00a0 Templated porphyrin assemblies using bio-inspired scaffolds: covalent and non-covalent approaches.\u00a0Handbook of Porphyrin Science<\/em><\/strong>\u00a0(2016)\u00a0<\/strong>Vol 44: 31-128.
\nhttp:\/\/dx.doi.org\/10.1142\/9789813149649_0002<\/a>\n\t

2014<\/strong><\/p>\n\t(11)\u00a0<\/strong>Monterroso RA, Masters, Fan M, Argyle MD,\u00a0Varga K<\/u>, Dyar D, Tang J, Sun Q, Towler BF, Elliot KW, and Kammen D; Characterization of the mechanism of gasification of a powder river basin coal with a composite catalyst for producing desired syngases and liquids.\u00a0Appl Catal-A<\/em><\/strong>\u00a0(2014)<\/strong>\u00a0475: 116-126.
\nhttp:\/\/dx.doi.org\/10.1016\/j.apcata.2014.01.007<\/a>\n\t

2013<\/strong><\/p>\n\t(10)\u00a0<\/strong>Tohgha U, Deol KK, Porter AG, Bartko SG, Choi JK, Leonard BM,\u00a0Varga K,<\/u>\u00a0Kubelka J, Muller G, and Balaz M. Ligand induced circular dichroism and circularly polarized luminescence in CdSe quantum dots.\u00a0ACS Nano<\/em><\/strong>\u00a0(2013)\u00a0<\/strong>7: 11094-11102.
\nhttp:\/\/dx.doi.org\/10.1021\/nn404832f<\/a>\n\t(9)\u00a0<\/strong>Tohgha U,\u00a0Varga K<\/u>, and Balaz M; Achiral CdSe quantum dots exhibit optical activity in the visible region upon post-synthetic ligand exchange with D- or L-cysteine.\u00a0Chem Commun<\/em><\/strong>\u00a0(2013)\u00a0<\/strong>49: 1844-1846.
\nhttp:\/\/dx.doi.org\/10.1039\/c3cc37987f<\/a>\n\t

2012<\/strong><\/p>\n\t(8)\u00a0<\/strong>Wang X, Saludes JP, Zhao TX, Csakai A, Fiorini Z, Chavez SA, Li J, Gui-in Lee G,\u00a0Varga K<\/u>, and Yin H; Targeting the lateral interactions of transmembrane domain 5 of Epstein-Barr virus latent membrane protein 1.\u00a0Biochim Biophys Acta\u00a0<\/em><\/strong>(2012)\u00a0<\/strong>1818: 2282-2289.
\nhttp:\/\/dx.doi.org\/10.1016\/j.bbamem.2012.05.013<\/a>\n\t

2011<\/strong><\/p>\n\t(7)\u00a0<\/strong>Higman VA,\u00a0Varga K<\/u>, Aslimovska L, Judge PJ, Sperling LJ, Rienstra CM, and Watts A; The conformation of bacteriorhodopsin loops in purple membranes resolved by solid-state MAS NMR spectroscopy.\u00a0Angew Chem Int Ed<\/em><\/strong>\u00a0(2011)\u00a0<\/strong>50: 8432-8435.
\nhttp:\/\/dx.doi.org\/10.1002\/anie.201100730<\/a>\n\t

Prior Independent Career<\/strong><\/p>\n\t(6)\u00a0<\/strong>Hugh RW, Dannatt HRW, Taylor GF,\u00a0Varga K<\/u>, Higman VA, Pfeil MP, Asilmovska L, Judge P, and Watts A; 13C- and 1H-detection under fast MAS for the study of poorly available proteins: application to sub-milligram quantities of a 7 trans-membrane protein.\u00a0J Biomol NMR\u00a0<\/em>(2015)<\/strong>\u00a062: 17-23.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25701262<\/a>\n\t(5)\u00a0<\/strong>Warner LR,\u00a0Varga K<\/u>, Lange OF, Baker SL, Baker D, Sousa MC, and Pardi A; Structure of the BamC two-domain protein obtained by Rosetta with a limited NMR data set.\u00a0J Mol Biol<\/em><\/strong>\u00a0(2011)<\/strong>\u00a0411: 83-95.
\nhttp:\/\/dx.doi.org\/10.1016\/j.jmb.2011.05.022<\/a>\n\t(4)\u00a0<\/strong>Varga K,<\/u>\u00a0Aslimovska L, and Watts A; Advances towards resonance assignments for uniformly-13C, 15N enriched bacteriorhodopsin at 18.8 T in purple membranes.\u00a0J Biomol NMR\u00a0<\/em>(2008)<\/strong>\u00a041: 1-4.
\nhttps:\/\/link.springer.com\/article\/10.1007\/s10858-008-9235-5<\/a>\n\t(3)\u00a0<\/strong>Varga K<\/u>, Aslimovska L, Parrot I, Dauvergne M-T, Haertlein M, Forsyth T, and Watts A; NMR crystallography: The effect of deuteration on high resolution 13C solid state NMR spectra of a 7-TM protein.\u00a0Biochim Biophys Acta<\/em><\/strong>\u00a0(2007)\u00a0<\/strong>1768: 3029-3035.
\nhttps:\/\/doi.org\/10.1016\/j.bbamem.2007.09.023<\/a>\n\t(2)\u00a0<\/strong>Varga K<\/u>\u00a0and Watts A; Introduction to solid state NMR and its application to membrane protein-ligand binding studies, in Biophysical Analysis of Membrane Proteins.\u00a0Investigating Structure and Function<\/em><\/strong>, Edited by Pebay-Peyroula, E., Wiley-VCH, Weinheim\u00a0(2007)\u00a0<\/strong>pp. 55-87.
\nhttps:\/\/doi.org\/10.1002\/9783527621224.ch3<\/a>\n\t(1)\u00a0<\/strong>Varga K<\/u>, Tian L, and McDermott AE; Solid state NMR study and assignments of the KcsA potassium ion channel of\u00a0S. lividans<\/em>.\u00a0Biochim Biophys Acta<\/em>\u00a0(2007)<\/strong>\u00a01774: 1604-1613.
\nhttps:\/\/doi.org\/10.1016\/j.bbapap.2007.08.029<\/a>\n\n","protected":false},"excerpt":{"rendered":"

2023 (32) Kwon YH, Joh YA, Leonard BM, Balaz M, and Varga\u00a0K; Threonine functionalized colloidal cadmium sulfide (CdS) quantum dots: The role of solvent and counterion in ligand induced chiroptical properties. Journal of Colloid and Interface Science\u00a0(2023) 642: 771-778. https:\/\/doi.org\/10.1016\/j.jcis.2023.03.177 2022 (31)\u00a0Sreter JA, Foxall\u00a0TL, and\u00a0Varga K; Intracellular and extracellular antifreeze protein significantly improves mammalian cell […]<\/p>\n","protected":false},"author":211,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-45","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/pages\/45","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/users\/211"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/comments?post=45"}],"version-history":[{"count":5,"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/pages\/45\/revisions"}],"predecessor-version":[{"id":111,"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/pages\/45\/revisions\/111"}],"wp:attachment":[{"href":"https:\/\/sites.usnh.edu\/vargalab\/wp-json\/wp\/v2\/media?parent=45"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}